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Genome-Scale Algorithm Design

Genome-Scale Algorithm Design

Bioinformatics in the Era of High-Throughput Sequencing

Djamal Belazzougui, Fabio Cunial, Veli Mäkinen, Alexandru I. Tomescu

Cambridge University Press
Publication date : 2023-10-12

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Presenting the fundamental algorithms and data structures that power bioinformatics workflows, this book covers a range of topics from the foundations of sequence analysis (alignments and hidden Markov models) to classical index structures (k-mer indexes, suffix arrays, and suffix trees), Burrows–Wheeler indexes, graph algorithms, network flows, and a number of advanced omics applications. The chapters feature numerous examples, algorithm visualizations, and exercises, providing graduate students, researchers, and practitioners with a powerful algorithmic toolkit for the applications of high-throughput sequencing. An accompanying website (www.genome-scale.info) offers supporting teaching material. The second edition strengthens the toolkit by covering minimizers and other advanced data structures and their use in emerging pangenomics approaches.

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About the book

Author

Djamal Belazzougui , Fabio Cunial , Veli Mäkinen , Alexandru I. Tomescu

Imprint

Cambridge University Press

Collection

n.c

Publication date

2023-10-12

Pages

n.c

Print ISBN

9781009341233

Language

English

Ebook informations

EAN PDF

9781009341219

Price

£58.01

Copy count 0

Print count 0

File size 8673 Ko

Informations accessibility

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About author(s)

Djamal Belazzougui

Fabio Cunial

Veli Mäkinen

Alexandru I. Tomescu

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